Index

_

_utils.utils module

B

backward_greedy_feature_selection() (diff_imbalance.DiffImbalance method) base module

Base (class in base) batches_per_epoch (diff_imbalance.DiffImbalance attribute) bord_indices (clustering.Clustering attribute)

C

causal_graph module CausalGraph (class in causal_graph) cluster_assignment (clustering.Clustering attribute) cluster_centers (clustering.Clustering attribute) cluster_indices (clustering.Clustering attribute) clustering module Clustering (class in clustering) common_neighs_array (neigh_graph.NeighGraph attribute) common_neighs_mat (neigh_graph.NeighGraph attribute) community_graph_visualization() (causal_graph.CausalGraph method) compute_adj_matrix() (causal_graph.CausalGraph method) compute_all_distances() (in module _utils.utils) compute_clustering_ADP() (clustering.Clustering method) compute_clustering_ADP_pure_python() (clustering.Clustering method) compute_clustering_DP() (clustering.Clustering method) compute_common_neighs() (neigh_graph.NeighGraph method) compute_cross_nn_distances() (in module _utils.utils) compute_DecGraph() (clustering.Clustering method) compute_deltaFs() (density_advanced.DensityAdvanced method) compute_density_BMTI() (density_advanced.DensityAdvanced method) compute_density_kNN() (density_estimation.DensityEstimation method) compute_density_kpeaks() (density_estimation.DensityEstimation method)

compute_density_kstarNN() (density_estimation.DensityEstimation method) compute_density_PAk() (density_estimation.DensityEstimation method) compute_diag_inv_deltaFs_cross_covariance_LSDI() (density_advanced.DensityAdvanced method) compute_distances() (base.Base method) (id_discrete.IdDiscrete method) compute_grads() (density_advanced.DensityAdvanced method) compute_id_2NN() (id_estimation.IdEstimation method) compute_id_2NN_wprior() (id_estimation.IdEstimation method) compute_id_binomial_k() (id_estimation.IdEstimation method) compute_id_binomial_k_discrete() (id_discrete.IdDiscrete method) compute_id_binomial_lk() (id_discrete.IdDiscrete method) compute_id_binomial_rk() (id_estimation.IdEstimation method) compute_local_density() (id_discrete.IdDiscrete method) compute_neigh_dists() (neigh_graph.NeighGraph method) compute_neigh_indices() (neigh_graph.NeighGraph method) compute_neigh_similarity_index() (neigh_graph.NeighGraph method) compute_neigh_similarity_index_mat() (neigh_graph.NeighGraph method) compute_neigh_vector_diffs() (neigh_graph.NeighGraph method) compute_nn_distances() (in module _utils.utils) compute_NN_PBC() (in module _utils.utils) compute_pearson() (density_advanced.DensityAdvanced method) compute_row_distances() (in module hamming) coords_future (causal_graph.CausalGraph attribute) coords_present (causal_graph.CausalGraph attribute)

D

data module Data (class in data) data_A (diff_imbalance.DiffImbalance attribute) data_B (diff_imbalance.DiffImbalance attribute) density_advanced module

density_estimation module DensityAdvanced (class in density_advanced) DensityEstimation (class in density_estimation) diff_imbalance module DiffImbalance (class in diff_imbalance)

F

feature_weighting module FeatureWeighting (class in feature_weighting) Fij_array (density_advanced.DensityAdvanced attribute) Fij_var_array (density_advanced.DensityAdvanced attribute)

find_communities() (causal_graph.CausalGraph method) fix_k() (id_discrete.IdDiscrete method) fix_k_shell() (id_discrete.IdDiscrete method) fix_lk() (id_discrete.IdDiscrete method) forward_greedy_feature_selection() (diff_imbalance.DiffImbalance method) from_all_distances_to_nndistances() (in module _utils.utils)

G

grads (density_advanced.DensityAdvanced attribute) grads_covmat (density_advanced.DensityAdvanced attribute)

grads_var (density_advanced.DensityAdvanced attribute) greedy_feature_selection_full() (metric_comparisons.MetricComparisons method) greedy_feature_selection_target() (metric_comparisons.MetricComparisons method)

H

hamming module

I

id_discrete module id_estimation module IdDiscrete (class in id_discrete)

IdEstimation (class in id_estimation) intrinsic_dim (id_discrete.IdDiscrete attribute) intrinsic_dim_err (id_discrete.IdDiscrete attribute) intrinsic_dim_scale (id_discrete.IdDiscrete attribute) inv_deltaFs_cov (density_advanced.DensityAdvanced attribute)

J

jcompute_distances() (in module hamming)

K

k (id_discrete.IdDiscrete attribute)

k_final (diff_imbalance.DiffImbalance attribute) k_init (diff_imbalance.DiffImbalance attribute)

L

l1_strength (diff_imbalance.DiffImbalance attribute) lambda_factor (diff_imbalance.DiffImbalance attribute) learning_rate (diff_imbalance.DiffImbalance attribute) learning_rate_decay (diff_imbalance.DiffImbalance attribute) lk (id_discrete.IdDiscrete attribute)

ln (id_discrete.IdDiscrete attribute) log_den (density_estimation.DensityEstimation attribute) log_den_bord (clustering.Clustering attribute) log_den_bord_err (clustering.Clustering attribute) log_den_err (density_estimation.DensityEstimation attribute)

M

metric_comparisons module MetricComparisons (class in metric_comparisons) model_validation_full() (id_discrete.IdDiscrete method) module _utils.utils base causal_graph clustering data density_advanced density_estimation diff_imbalance feature_weighting hamming id_discrete id_estimation metric_comparisons neigh_graph

N

n (id_discrete.IdDiscrete attribute) N_clusters (clustering.Clustering attribute) neigh_dists (neigh_graph.NeighGraph attribute) neigh_graph module neigh_similarity_index (neigh_graph.NeighGraph attribute) neigh_similarity_index_mat (neigh_graph.NeighGraph attribute)

neigh_vector_diffs (neigh_graph.NeighGraph attribute) NeighGraph (class in neigh_graph) nind_iptr (neigh_graph.NeighGraph attribute) nind_list (neigh_graph.NeighGraph attribute) nspar (neigh_graph.NeighGraph attribute) num_epochs (diff_imbalance.DiffImbalance attribute) num_points_rows (diff_imbalance.DiffImbalance attribute)

O

optimize_present_to_future() (causal_graph.CausalGraph method)

Optimizer (class in hamming) optimizer_name (diff_imbalance.DiffImbalance attribute)

P

params_init (diff_imbalance.DiffImbalance attribute) pearson_array (density_advanced.DensityAdvanced attribute) periods (causal_graph.CausalGraph attribute) periods_A (diff_imbalance.DiffImbalance attribute)

periods_B (diff_imbalance.DiffImbalance attribute) point_adapt_lambda (diff_imbalance.DiffImbalance attribute) posterior (id_discrete.IdDiscrete attribute) posterior_domain (id_discrete.IdDiscrete attribute)

R

ratio (id_discrete.IdDiscrete attribute) remove_identical_points() (base.Base method) remove_zero_dists() (base.Base method) return_backward_greedy_dii_elimination() (feature_weighting.FeatureWeighting method) return_data_overlap() (metric_comparisons.MetricComparisons method) return_dii() (feature_weighting.FeatureWeighting method) return_dii_gradient() (feature_weighting.FeatureWeighting method) return_entropy() (density_estimation.DensityEstimation method) return_final_dii() (diff_imbalance.DiffImbalance method) return_id_fit() (id_discrete.IdDiscrete method) return_id_fit_continuum() (id_discrete.IdDiscrete method) return_id_scaling() (id_discrete.IdDiscrete method) return_id_scaling_2NN() (id_estimation.IdEstimation method) return_id_scaling_gride() (id_estimation.IdEstimation method) return_id_scaling_k() (id_discrete.IdDiscrete method) return_ids_kstar_binomial() (data.Data method) return_ids_kstar_gride() (data.Data method) return_inf_imb_causality() (metric_comparisons.MetricComparisons method) return_inf_imb_causality_conditioning() (metric_comparisons.MetricComparisons method) return_inf_imb_causality_input_rank() (metric_comparisons.MetricComparisons method) return_inf_imb_full_all_coords() (metric_comparisons.MetricComparisons method)

return_inf_imb_full_all_dplets() (metric_comparisons.MetricComparisons method) return_inf_imb_full_selected_coords() (metric_comparisons.MetricComparisons method) return_inf_imb_matrix_of_coords() (metric_comparisons.MetricComparisons method) return_inf_imb_target_all_coords() (metric_comparisons.MetricComparisons method) return_inf_imb_target_all_dplets() (metric_comparisons.MetricComparisons method) return_inf_imb_target_selected_coords() (metric_comparisons.MetricComparisons method) return_inf_imb_two_selected_coords() (metric_comparisons.MetricComparisons method) return_information_imbalace() (metric_comparisons.MetricComparisons method) return_interpolated_density_kNN() (density_estimation.DensityEstimation method) return_interpolated_density_kstarNN() (density_estimation.DensityEstimation method) return_interpolated_density_PAk() (density_estimation.DensityEstimation method) return_label_overlap() (metric_comparisons.MetricComparisons method) return_label_overlap_coords() (metric_comparisons.MetricComparisons method) return_label_overlap_selected_coords() (metric_comparisons.MetricComparisons method) return_lasso_optimization_dii_search() (feature_weighting.FeatureWeighting method) return_nn_indices() (causal_graph.CausalGraph method) return_optimal_lambda() (feature_weighting.FeatureWeighting method) return_optimal_learning_rate() (feature_weighting.FeatureWeighting method) return_overlap_coords() (metric_comparisons.MetricComparisons method) return_ranks_present_for_all_weights() (metric_comparisons.MetricComparisons method) return_sparse_distance_graph() (neigh_graph.NeighGraph method) return_weights_optimize_dii() (feature_weighting.FeatureWeighting method)

S

seed (causal_graph.CausalGraph attribute) (diff_imbalance.DiffImbalance attribute) set_id() (id_discrete.IdDiscrete method) (id_estimation.IdEstimation method) set_kstar() (density_advanced.DensityAdvanced method) (density_estimation.DensityEstimation method) (neigh_graph.NeighGraph method)

set_lk_ln() (id_discrete.IdDiscrete method) set_ratio() (id_discrete.IdDiscrete method) set_w() (id_discrete.IdDiscrete method) standardize (causal_graph.CausalGraph attribute)

T

time_series (causal_graph.CausalGraph attribute)

train() (diff_imbalance.DiffImbalance method)