Table of Contents
Installation
Implemented Algorithms
Typical usage of the package
Modules (API reference)
Tutorial: Density Based Clustering
Tutorial: Information Imbalance
Tutorial: Intrinsic dimension
Tutorial: Using DADApy to analyse a molecular dynamics trajectory of a small peptide
Tutorial: Intrinsic dimension estimation for discrete metrics
Tutorial: Differentiable Information Imbalance
Tutorial: Differentiable Information Imbalance (JAX implementation)
Tutorial: Community causal graph reconstruction
Tutorial: Binary Intrinsic Dimension
Hands-on tutorial at SISSA
Citing DADApy
dadapy
Overview: module code
All modules for which code is available
_utils.utils
base
causal_graph
clustering
data
density_advanced
density_estimation
diff_imbalance
feature_weighting
hamming
id_discrete
id_estimation
metric_comparisons
neigh_graph